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A primer to phylogenetic analysis using the PHYLIP package
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Testing molecular clock. .... PHYLIP is a comprehensive phylogenetic analysis package created by Joseph Felsenstein at the University of Washington. This package can do many of the phylogenetic analyses available in the literature today ...
Cladistics
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on the existing phylogenetic hypotheses about the ... ana baluensis so we obviously did not test the mono- .... species for phylogenetic analysis is that of Haas (2003), and, as much as possible, .... the practical problems appear to us to be minimal. ..... accuracy of the direct optimization approach via POY and ...
Phylogenetic overview of the genus Squalius (Actinopterygii ...
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A phylogenetic analysis based on the complete sequence of the mito- ...... On the other hand, the neighbour joining approach .... Testing freshwater Lago. Mare dispersal theory on the phylogeny relationships of Iberian ...
THE RECLASSIFICATION OF PFIESTERIA SHUMWAYAE (DINOPHYCEAE ...
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MD, USA) were all grown as described in Litaker and Tester. (2002). These cultures were fed either Rhodomonas ... Phylogenetic analysis. The consensus sequences for all five ... approach made it possible to evaluate whether Pfiesteria pisci- ..... Practical Guide to the Analysis of Genes and Proteins. Wiley-Liss, ...
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Phylogenetic analysis — Create and manipulate phylogenetic tree data. ..... path algorithm for DAG, however testing if a graph is acyclic is expensive ...
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the results of phylogenetic analyses. In this regard, statistical model selection has ..... Certainly many things, but one of them is to approach to ...... have been practical even with access to dedicated HPC resources, largely because ... For the purpose of testing PS3GRID, we studied this process using a simple ...
Phylogenetic comparison of the carboxy-terminal region of ...
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... phylogenetic analysis. The results suggest that the phylogenetic analysis performed ..... the hypothesis tested for evolution of the BoHV-1.1, BoHV- ...
INTERNAL AND EXTERNAL CONSTRAINTS IN THE EVOLUTION OF ...
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Because our approach selects females equally from across the full ... category for the fitness tests. In this manner, we generated control- .... We tested the hypothesis that the plateau in the response to ..... Phylogenetic analysis of sexual di- morphism and eye-span allometry in stalk-eyed flies (Diopsidae). ...
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